LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-208b-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-208b-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127077-127090
0.007
12
7mer
155314-155334
0.006
1
7mer
37791-37811
0.005
0
7mer
126269-126282
0.004
1
7mer
220300-220323
0.004
0
8mer
110822-110847
0.004
0
7mer
257978-257994
0.003
1
6mer
163551-163578
0.003
5
6mer
85847-85872
0.003
6
7mer
92415-92437
0.003
0
6mer
84908-84922
0.003
5
7mer
178111-178124
0.003
1
7mer
50917-50933
0.003
1
6mer
11105-11121
0.003
1
7mer
154510-154525
0.003
2
6mer
96265-96284
0.003
0
6mer
186525-186537
0.003
3
6mer
13960-13978
0.003
1
6mer
171878-171905
0.003
1
6mer
83821-83838
0.003
2
7mer
175395-175420
0.002
2
6mer
40236-40261
0.002
2
6mer
48589-48607
0.002
1
6mer
117630-117646
0.002
1
6mer
179146-179160
0.002
4
6mer
221790-221809
0.002
0
6mer
180071-180081
0.002
3
6mer
60501-60518
0.002
4
6mer
3668-3680
0.002
1
6mer
7997-8014
0.002
2
6mer
15070-15087
0.002
1
6mer
170666-170682
0.002
1
6mer
4070-4088
0.002
4
6mer
54250-54262
0.002
1
6mer
36380-36405
0.002
1
6mer
151377-151402
0.002
1
6mer
147438-147455
0.002
2
6mer
135897-135914
0.002
1
7mer
28668-28682
0.002
0
6mer
202440-202458
0.002
0
6mer
121384-121403
0.002
Not Conserved
6mer
253066-253084
0.002
1
6mer
151695-151718
0.002
0
6mer
8116-8137
0.002
6
6mer
142216-142241
0.002
1
6mer
90258-90280
0.002
0
6mer
244994-245014
0.002
0
6mer
82538-82554
0.002
Not Conserved
6mer
224985-225010
0.002
1
6mer
89562-89575
0.002
1
6mer
125202-125227
0.002
0
7mer
148814-148826
0.002
0
6mer
176281-176302
0.002
1
6mer
98993-99014
0.002
1
6mer
4202-4222
0.002
1
7mer
8509-8535
0.002
Not Conserved
6mer
175048-175065
0.002
1
6mer
65922-65935
0.002
0
6mer
23527-23548
0.002
1
6mer
245756-245770
0.002
0
6mer
157345-157359
0.002
1
6mer
38144-38164
0.002
Not Conserved
6mer
46659-46676
0.002
1
6mer
182303-182316
0.002
1
6mer
210898-210909
0.002
1
6mer
173345-173360
0.002
1
6mer
128074-128099
0.002
1
6mer
63900-63920
0.002
1
6mer
241464-241481
0.002
Not Conserved
6mer
1670-1683
0.002
1
6mer
208658-208681
0.002
1
6mer
183851-183870
0.002
2
6mer
82057-82067
0.002
1
6mer
203112-203130
0.001
1
6mer
8279-8301
0.001
2
6mer
75983-76002
0.001
Not Conserved
6mer
106089-106112
0.001
0
6mer
7527-7545
0.001
2
6mer
76646-76664
0.001
1
6mer
188198-188218
0.001
1
6mer
117037-117060
0.001
0
6mer
57251-57276
0.001
1
6mer
258193-258210
0.001
0
6mer
41406-41423
0.001
0
6mer
81879-81898
0.001
1
6mer
37161-37185
0.001
Not Conserved
6mer
51069-51084
0.001
1
6mer
13654-13680
0.001
Not Conserved
6mer
36494-36516
0.001
1
6mer
72136-72150
0.001
1
6mer
204784-204803
0.001
2
6mer
240241-240258
0.001
1
6mer
60583-60603
0.001
3
6mer
183612-183636
0.001
Not Conserved
6mer
120792-120815
0.001
1
6mer
178492-178507
0.001
1
6mer
154088-154104
0.001
Not Conserved
6mer
66063-66084
0.001
0
6mer
28591-28608
0.001
Not Conserved
6mer
208729-208751
0.001
2
6mer
151385-151408
0.001
2
6mer
154533-154554
0.001
Not Conserved
6mer
175073-175083
0.001
0
6mer
110876-110895
0.001
0
6mer
183646-183672
0.001
0
XLOC_011696
hsa-miR-208b-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024372
Biotype: transcript isomorph
Gene id: XLOC_011696
Gene Name: XLOC_011696
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2133-2152
0.078
0
6mer
1663-1667
0.017
0
6mer
784-799
0.004
Not Conserved
HAS2-AS1
hsa-miR-208b-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518865
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-133
0.071
Not Conserved
6mer
330-345
0.018
7
RP11-92F20.1
hsa-miR-208b-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000622296
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-440
0.066
10
7mer
78-99
0.015
5
LINC01189
hsa-miR-208b-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3237-3252
0.025
1
6mer
2473-2487
0.016
1
7mer
647-672
0.014
1
6mer
936-955
0.011
1
6mer
1158-1178
0.010
1
AC006116.21
hsa-miR-208b-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591036
Biotype: lincRNA
Gene id: ENSG00000267606
Gene Name: AC006116.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-468
0.068
1
HAS2-AS1
hsa-miR-208b-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522197
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
285-307
0.067
Not Conserved
HAS2-AS1
hsa-miR-208b-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514180
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
841-863
0.046
Not Conserved
6mer
1060-1075
0.013
7
6mer
1516-1535
0.007
0
RP11-92F20.1
hsa-miR-208b-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620050
Biotype: antisense
Gene id: ENSG00000274629
Gene Name: RP11-92F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-426
0.065
10
KCNQ1OT1
hsa-miR-208b-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67229-67248
0.005
1
7mer
17848-17873
0.005
1
7mer
5545-5551
0.004
0
6mer
68625-68644
0.004
3
6mer
51332-51336
0.003
1
6mer
40316-40341
0.002
1
6mer
15505-15521
0.002
1
6mer
32593-32612
0.002
0
6mer
71326-71343
0.002
1
6mer
70678-70701
0.002
1
6mer
62455-62475
0.002
1
6mer
52588-52606
0.002
1
6mer
89940-89960
0.002
1
6mer
32957-32977
0.002
0
6mer
11162-11179
0.002
Not Conserved
6mer
46563-46580
0.002
1
6mer
73943-73955
0.002
1
6mer
27674-27686
0.002
0
6mer
61560-61580
0.002
1
6mer
9615-9631
0.002
1
6mer
71081-71106
0.002
1
6mer
82123-82142
0.002
0
6mer
38701-38720
0.001
0
6mer
31716-31737
0.001
0
6mer
38589-38611
0.001
0
6mer
35418-35435
0.001
0
6mer
80972-80997
0.001
1
AC006548.28
hsa-miR-208b-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33742-33766
0.004
Not Conserved
7mer
31371-31389
0.004
1
6mer
9192-9205
0.003
6
6mer
38845-38858
0.003
3
6mer
66227-66246
0.003
0
6mer
1058-1077
0.003
1
7mer
70336-70353
0.003
0
7mer
34687-34706
0.002
1
6mer
68513-68531
0.002
0
6mer
78048-78074
0.002
0
6mer
55811-55835
0.002
1
6mer
33975-33999
0.002
1
6mer
16882-16908
0.002
Not Conserved
6mer
28955-28981
0.002
0
6mer
67487-67512
0.002
0
6mer
59443-59456
0.002
1
6mer
42303-42323
0.002
0
6mer
53987-54007
0.002
Not Conserved
6mer
21472-21496
0.002
1
6mer
35941-35952
0.002
1
6mer
29950-29973
0.002
0
6mer
18942-18960
0.001
0
6mer
13511-13526
0.001
1
6mer
24208-24224
0.001
1
6mer
71659-71681
0.001
0
6mer
17986-17999
0.001
0
6mer
48418-48440
0.001
Not Conserved
RP11-142O6.1
hsa-miR-208b-3p
0.941
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584382
Biotype: sense_intronic
Gene id: ENSG00000266371
Gene Name: RP11-142O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
792-809
0.026
0
6mer
2298-2311
0.008
0
6mer
2366-2381
0.008
0
7mer
1033-1052
0.007
0
6mer
2072-2085
0.007
0
LINC00216
hsa-miR-208b-3p
0.927
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000623548
Biotype: lincRNA
Gene id: ENSG00000279636
Gene Name: LINC00216
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-108
0.052
1
ERVH48-1
hsa-miR-208b-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
282-301
0.025
0
6mer
1704-1716
0.024
0
DPP10-AS2
hsa-miR-208b-3p
0.902
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446992
Biotype: antisense
Gene id: ENSG00000235717
Gene Name: DPP10-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
397-422
0.013
Not Conserved
7mer
484-507
0.012
0
7mer
455-478
0.012
Not Conserved
7mer
339-362
0.009
Not Conserved
XLOC_003651
hsa-miR-208b-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007401
Biotype: transcript isomorph
Gene id: XLOC_003651
Gene Name: XLOC_003651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2019-2043
0.027
1
6mer
1883-1904
0.019
1
XLOC_000283
hsa-miR-208b-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001018
Biotype: transcript isomorph
Gene id: XLOC_000283
Gene Name: XLOC_000283
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
334-349
0.016
1
7mer
812-832
0.016
1
6mer
823-837
0.014
1
XLOC_006344
hsa-miR-208b-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013682
Biotype: transcript isomorph
Gene id: XLOC_006344
Gene Name: XLOC_006344
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-549
0.044
1
CH17-262A2.1
hsa-miR-208b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000618815
Biotype: sense_intronic
Gene id: ENSG00000275426
Gene Name: CH17-262A2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
33-52
0.020
0
6mer
341-359
0.015
1
bP-2189O9.3
hsa-miR-208b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623794
Biotype: lincRNA
Gene id: ENSG00000279579
Gene Name: bP-2189O9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-208b-3p
Sequence: auaagacgaacaaaagguuugu
MirBase ID: MIMAT0004960
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
645-667
0.022
0
6mer
436-455
0.021
0
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